Pampanito's first war patrol, from 15 March to 2 May, was conducted in the southwest approaches to Saipan and Guam. She served on lifeguard duty south of Yap, then scored two torpedo hits on a destroyer before sailing for Midway Island and Pearl Harbor for refit and repairs to a hull badly damaged by depth charges.
Second patrol, June - July 1944
Pampanitos second war patrol, from 3 June to 23 July, took place off Kyūshū, Shikoku, and Honshū. On 23 June, a submerged Japanese submarine fired two torpedoes, just missing Pampanito. On 6 July, Pampanito damaged a Japanese gunboat, and 11 days later headed for Midway Island.
Pampanitos third war patrol, from 17 August to 28 September, a wolfpack operation with submarines and, was conducted in the South China Sea. On 12 September, she sank 9,419 ton SS Rakuyō Maru, which unfortunately was transporting 1,350 British and Australian POWs, also the 5,135 ton tanker Zuihō Maru, and she damaged a third ship. The Japanese survivors were rescued by an escort vessel, leaving POWs in the water with rafts and some abandoned boats. A total of 1,159 POWs died, of whom some 350 in lifeboats were bombarded and killed by a Japanese naval vessel the next day when they were rowing towards land. On 15 September, Pampanito moved back to the area of the original attack and found men clinging to makeshift rafts. As the sub moved closer, the men were heard to be shouting in English. Pampanito was able to pick up 73 British and Australian survivors and called in three other subs, Sealion, and, to assist with the rescue. She then set course for Saipan, disembarked the survivors, and continued on to Pearl Harbor.
Pampanitos fourth war patrol, from 28 October to 30 December, took place off Formosa and the coast of southeastern China with,, and. Sinking the 1200 ton cargo ship Shinko Maru Number One, 19 November, she damaged a second ship before putting into Fremantle for refit.
Pampanito's fifth war patrol in the Gulf of Siam, from 23 January to 12 February 1945, with, was highlighted by two sinkings, the 6,968-ton cargo ship Engen Maru 6 February and the 3,520-ton passenger-cargo ship Eifuku Maru on 8 February.
Sixth patrol
Refitted at Subic Bay, Pampanito returned to the Gulf of Siam for her sixth war patrol. Operating with,, and, she sighted only one target before sailing for Pearl Harbor.
1945-1971
From Pearl Harbor the ship proceeded to San Francisco for overhaul, departing for Pearl Harbor again 1 August. With the end of the war, she was ordered to return to San Francisco. She was decommissioned at Mare Island on 15 December 1945. She remained in reserve until April 1960 when she was assigned to Naval Reserve Training at Mare Island Naval Shipyard. Reclassified AGSS-383, 6 November 1962, she served as a Naval Reserve Training ship at Vallejo, California, until she was stricken from the Navy Register on 20 December 1971. Pampanito earned six battle stars for World War II service.
Museum ship
Pampanito was turned into a memorial and museum at San Francisco on 21 November 1975, transferred to the Maritime Park Association on 20 May 1976, and opened to the public on 15 March 1982. In 1986, Pampanito was listed on the National Register of Historic Places and declared to be a National Historic Landmark. She is now owned and operated by the San Francisco Maritime National Park Association and is moored at Pier 45 in San Francisco's Fisherman's Wharf area, where she is open for visiting. The USS PAMPANITO Amateur Radio Club brings the radio room to life on the 2nd and 4th Saturdays of each month using the callsign NJ6VTNJVT was the boat's call sign during WWII. Ham radio operators may contact the boat on 7.260 and 14.260 MHz using voice, and on other frequencies using Morse Code. She flies a broom from her mast, indicating a clean sweep: a successful patrol that "swept the enemy from the seas." In total, she sank six Japanese ships and damaged four others with a total of more than 27,000 tons of enemy shipping sunk. Pampanito has completed four maintenance drydockings since becoming a memorial and museum. "The Pampanito still has several working parts, including one torpedo tube, the periscope, engines, galley and ice-cream maker." The museum runs educational programs including one that allows organized groups of children and adults to sleep overnight in the submarine's 48 bunk beds. The ship was closed to the public and moved to a dry-dock on 23 September 2016 and returned from Bay Ship & Yacht in Alameda, CA on 14 November 2016 and is currently open to the public. The Pampanito and SS Jeremiah O'Brien were threatened by a 4-alarm fire on May 23, 2020, but were rescued by local firefighters.
In film
Pampanito played the fictional USS Stingray in the comedy filmDown Periscope. Kelsey Grammer stars as the Stingrays captain, Lt. Commander Thomas Dodge, and the film is set in Charleston and Norfolk harbors on the US east coast. The action scenes use a combination of a special effects shooting miniature for the composited underwater scenes, older Pampanito color stock footage of her under power on the surface, then submerging, and newly shot footage of Pampanito moving under tow in San Francisco Bay while venturing past the Golden Gate Bridge. It had been fifty years since she sailed under the bridge.