The mountain, which rises to an elevation of, is the highest point in San Benito County and the Diablo Range. The mountain gets some snowfall during winter. The rock is a chrysotile serpentine, a soft fibrous silicate material. Extreme shearing of the bedrock, combined with soil nutrient imbalances, has resulted in extensive areas of natural barrens completely devoid of vegetation. The serpentine soils harbor several rare plant species, including the Federally listed Threatened San Benito evening primrose. A unique pine and incense cedar forest occurs at the highest elevations of the mountain and in 1980, the San Benito Mountain Research Natural Area was designated an Instant Wilderness Study Area. The serpentine mass contains two superfund sites, Atlas Mine and Johns-Mansville. Both were associated with the mining and processing of chrysotile asbestos. Other minerals mined from the serpentine mass included cinnabar, chromite, magnesite, and jadeite. The Gem mine located within the serpentine mass is the only source of gem-grade benitoite in the world. The rare minerals neptunite and joaquinite have also been found there.
The Clear Creek Management Area, which encompasses the San Benito Mountain Research Natural Area, was temporarily closed by the BLM from May 2008 to February 2014 due to concerns of visitor exposure to naturally occurring asbestos. The core area of the Clear Creek Management Area is the New Idria serpentine mass. The serpentine is highly sheared/pulverized and contains abundant chrysotile asbestos. Therefore, the U.S. Bureau of Land Management requires visitors to obtain permits to enter the Clear Creek Serpentine Area of Critical Environmental Concern. Recreational opportunities include hunting, camping, hobby gem/mineral collecting, mountain biking, horseback riding, hiking/backpacking, and sightseeing. Hobby gem and mineral collectors are drawn to the Clear Creek area, one of the most highly mineralized areas in California, by the presence of over 150 semi-precious minerals and gemstones. Among these are serpentine, jadeite, cinnabar, tremolite, topazite, neptunite, and the extremely rare California state gem, benitoite. There are two developed campgrounds in the CCMA, Oak Flat and Jade Mill, both with picnic tables, shade structures, fire rings, and pit toilet. Permit & Season Information Serpentine Area of Critical Environmental Concern Permit: This free permit allows an individual to access the Serpentine ACEC within the Clear Creek Management Area for the duration of one day. Each person, regardless of age, entering the Serpentine ACEC is required to have a permit in their name and on their person. An individual is allowed a total of five permits per calendar year. Vehicle Permit: Vehicles entering the Clear Creek Management Area, including the Condon Peak campground and trailhead, are required to have a Clear Creek Vehicle Permit. The permit is $5 per vehicle and allows the vehicle to enter the Clear Creek Management Area for seven days from the date of entry. Each vehicle must display the permit on its dash while in the Clear Creek Management Area. Condon Peak Off-Highway Vehicle Permit: Every ATV or Utility Terrain Vehicle entering Condon Peak's trail network is required to have a permit. The permit cost is $10 and allows the ATV/UTV driver, age 16 and older, access to the route network at Condon Peak for seven days from the entry date.