On account of the presence of his friend, Mike Lerner, he chose to enroll in the Department of Bacteriology of the University of California, Berkeley, but he found himself uninterested by the phage research done under A.P. Krueger, and he subsequently accepted a teaching assistantship at the University of California Los Angeles for the 1938–1939 term, his first paid employment. During his time at UCLA, he attended the famous summer course taught by C. B. van Niel at the Hopkins Marine Station in Pacific Grove, California. His experience there drove his decision to pursue general microbiology. After receiving his M.A. from UCLA in 1939 he returned to Pacific Grove as van Niel's student. After his graduation he worked with Marjory Stephenson at the University of Cambridge as a Guggenheim fellow beginning in 1945.
University of California, Berkeley (1947–1971)
Upon his return to the United States he served a short appointment at the University of Indiana before accepting an invitation to join the Department of Bacteriology of the University of California, Berkeley, where he remained for most of his career.
In 1971 he left Berkeley and moved to Paris, where he worked at the Institut Pasteur for the last decade of his life. He described the reasons for his departure as both academic and political: academic disruptions amid the campus turmoil associated with the Free Speech Movement, then governor Ronald Reagan's ouster of University of California president Clark Kerr, and the election of President Richard Nixon. Along with his wife Germaine, he accepted the invitation of Élie Wollman to take over the former lab space of François Jacob and Jacques Monod, with the stipulation that he be allowed to work on cyanobacteria exclusively. He was elected a Fellow of the Royal Society in 1978.
Scientific legacy
Stanier's research career included a diverse variety of research problems bound by a desire to synthesize the general and specific patterns observed in bacteria into a more unified understanding of biology as a whole. Together with C. B. van Niel, Stanier was described by Carl Woese as one of the "only consistently insightful and articulate reporters of the early search for a microbial phylogeny". Stanier participated in Bergey’s Manual Trust during its conception. He invented the technique of simultaneous adaption for the analysis of metabolic pathways. Stanier's work on Cyanobacteria focused on obligate autotrophy, fatty acid composition, structure of phycobiliproteins and phycobilisomes, chromatic adaptation, nitrogen fixation, and their nutrition and taxonomy. Stanier also authored an influential textbook, The Microbial World. The Microbial World played an important role in the promulgation of the concepts of "prokaryote" and "eukaryote" as negative definitions of Bacteria and Archea.