Born in Câmara de Lobos, Madeira, Micael started his career with local C.F. União, making his professional debut at the age of 17. For the 2008–09 season, he moved across the island to sign with Primeira Liga club C.D. Nacional. In that first year, in which Nacional qualified for the UEFA Europa League, Micael, almost never an undisputed starter, featured heavily, scoring notably in a 3–1 home win over S.L. Benfica on 2 May 2009. The previous month, he played for Portugal B in a 2–0 win against Romania. Micael started the 2009–10 campaign established in the side's starting XI, notably netting twice against FC Zenit Saint Petersburg in the Europa League's last qualifying round, first in the 4–3 home triumph, then adding a last-minute effort in Russia for the 1–1 and the two-legged aggregate win.
Porto
In mid-January 2010, FC Porto purchased 60% of Micael's playing rights for a €3 million transfer fee, signing him to a four-and-a-half-year deal and setting his release clause at €30 million. His first league game for his new club came on 30 January, where he started in the place of the suspended Raul Meireles in a 4–0 away success against his former team, Nacional. In 2010–11, Micael was used sparingly by new manager André Villas-Boas. Nonetheless, he still appeared in 36 official matches and totalled 871 minutes of action as the team won the treble.
On 18 August 2011, Micael and Porto teammate Radamel Falcao were both purchased by Atlético Madrid for – the former for, although Porto later confirmed that his sale did not generate any revenue for the club. The midfielder was then immediately loaned to fellow La Liga side Real Zaragoza, for a fee of €750,000. 23 of his appearances were as a starter, as his team narrowly avoided relegation. Micael was loaned to S.C. Braga for 2012–13, starting the year in impressive fashion: in two games separated by only three days in late August, he scored three goals, starting with a brace in a 3–1 home win against S.C. Beira-Mar then netting the 1–1 equalizer at Udinese Calcio in the UEFA Champions League last qualifying round. In the latter match, he rounded up his performance by converting the decisive penalty in the shootout to help his team reach the group stage for the second time in their history. Micael continued his strong displays in the Champions League group phase, scoring the first goal in an eventual 2–0 away success over Galatasaray SK in the second round. On 20 October 2012, Atlético sold 50% of his economic rights to Braga for €3 million.
On 16 January 2018, Micael returned to Portugal's top flight, signing for F.C. Paços de Ferreira until 2021. In June, however, he switched to a one-year deal at Vitória F.C. under his former Maccabi manager Lito Vidigal. At the end of his contract in Setúbal, Micael returned to Nacional after nine years away. The 33-year-old was their first signing, following relegation in May 2019.
International career
On 29 March 2011, Micael made his debut for Portugal, starting and scoring twice in a 2–0 friendly win over Finland in Aveiro. He was chosen by coach Paulo Bento for UEFA Euro 2012 in Poland and Ukraine, but played no matches for the semi-finalists.