The museum's permanent exhibits include archaeological artifacts from the Amerind property by founder William Shirley Fulton and later by director Charles C. Di Peso, as well as items found at Di Peso at Casas Grandes, Chihuahua, Mexico and other excavations. The objects include weapons, tools, baskets, sandals, cordage of human hair, and cloth. There are ethnographic items from different indigenous peoples ranging from Alaska to South America. Items on display include jewelry, baskets, weapons, cradle boards, religious artifacts, figurative items, ceramics and pottery, and art.
A Ceremonial Cave in the Winchester Mountains, Arizona, by William Shirley Fulton. Amerind Foundation Publication No. 2. 1941.
Painted Cave in Northeastern Arizona, by Emil W. Haury. Amerind Foundation Publication No. 3. 1945.
The Tres Alamos Site on the San Pedro River, Southeastern Arizona, by Carr Tuthill. Amerind Foundation Publication No. 4. 1947.
The Babocomari Village Site on the Babocomari River, Southeastern Arizona, by Charles C. Di Peso. Amerind Foundation Publication No. 5. 1951.
The Sobaipuri Indians of the Upper San Pedro Valley, Southeastern Arizona, by Charles C. Di Peso. Amerind Foundation Publication No. 6. 1953.
The Upper Pima of San Cayetano del Tumacacori, by Charles C. Di Peso. Amerind Foundation Publication No. 7. 1956.
The Reeve Ruin of Southeastern Arizona, by Charles C. Di Peso. Amerind Foundation Publication No. 8. 1958.
Casas Grandes: A Fallen Trading Center of the Gran Chichimeca, by Charles C. Di Peso, John B. Rinaldo, and Gloria J. Fenner. Amerind Foundation Publication No. 9. Vols. 1-8. 1974.
Culture and Contact: Charles C. Di Peso's Gran Chichimeca, edited by Anne I. Woosley and John C. Ravesloot. University of New Mexico Press. 1993.
MimbresMogollonArchaeology, by Anne I. Woosley and Allan J. McIntyre. Amerind Foundation Publication No. 10. University of New Mexico Press. 1996.
Great Towns and Regional Polities: Cultural Evolution in the U.S. Southwest and Southeast, edited by Jill E. Neitzel. University of New Mexico Press. 1999.
Salado, edited by Jeffrey S. Dean. University of New Mexico Press. 2000.
Anthropological Perspectives on Technology, edited by Michael B. Schiffer. University of New Mexico Press. 2001.
Embedded Symmetries: Natural and Cultural, edited by Dorothy K. Washburn. University of New Mexico Press. 2004.
Trincheras Sites in Time, Space, and Society, edited by Suzanne K. Fish, Paul R. Fish, and M. Elisa Villalpando. University of Arizona Press. 2007.