2003–04 FC Bayern Munich season
FC Bayern Munich did not win any trophies in the 2003–04 season, but nevertheless qualified for the next years' Champions League. The biggest disappointment was losing 3–1 at home to champions Werder Bremen at the end of the season, being three goals down after just 35 minutes. New signing Roy Makaay scored 23 league goals, adapting smoothly to Bundesliga, but the defensive performances were not good enough to overhaul Werder Bremen at the end of the season.
Results
Bundesliga
League results
DFB-Pokal
DFB-Ligapokal
Champions League
Group stage results
League results
Knockout stage results
Round of 16
Team statistics
Squad statistics
Squad, appearances and goals
Minutes played
Discipline
Bookings
Suspensions
| Player | No. of matches served | Reason | Competition served in | Date served | Opponent | Source | |
| 11 | Zé Roberto | 2 | Red card vs. Bayer Leverkusen | Bundesliga | 27 September | Hansa Rostock | |
| 11 | Zé Roberto | 2 | Red card vs. Bayer Leverkusen | Bundesliga | 4 October | Hertha BSC | |
| 14 | Claudio Pizarro | 1 | Red card vs Anderlecht | Champions League | 21 October | Lyon | |
| 25 | Thomas Linke | 1 | Red card vs. FC Schalke 04 | Bundesliga | 9 November | Borussia Dortmund | |
| 13 | Michael Ballack | 1 | 5th yellow card | Bundesliga | 16 December | SC Freiburg | |
| 13 | Michael Ballack | 1 | Red card vs Hannover 96 | Bundesliga | 14 February | VfL Bochum | |
| 6 | Martín Demichelis | 1 | 5th yellow card | Bundesliga | 6 March | Bayer Leverkusen | |
| 13 | Michael Ballack | 1 | Red card vs Borussia Dortmund | Bundesliga | 25 April | 1860 Munich | |
| 23 | Owen Hargreaves | 1 | 5th yellow card | Bundesliga | 22 May | SC Freiburg | |
| 20 | Hasan Salihamidžić | 1 | 5th yellow card | Bundesliga | 22 May | SC Freiburg |